Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQNKFNGLYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHL-GTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPFLEVMNEFNAKV
1RYN Chain:A ((6-189))
--LIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKK----RHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFN---
General information:
TITO was launched using:
RESULT:
Template:
1RYN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122866 for 1457 contacts (-84.3/contact) +
2D Compatibility (PS) -18944 + (NN) -4297 + (LL) 556
1D Compatibility (HY) -16400 + (ID) 4050
Total energy: -166001.0 ( -113.93 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_1RYN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RYN-query.scw
PDB file :
Tito_Scwrl_1RYN.pdb
: