Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTLTTQFYTMLAMSGMGLWLGASLDTYRLFVIRAKTARWLLFIHDILFWIMQGLLFFYVLLHVNEGEFRIYIFLAVLLGVATYQSLCKRIYIKILKFVIYLVVSVYQFFKKLIQHVLFRPIVWTCGAIIWLAAFLFKKTYSLIGFLLLCLYKIVMVLCFPIRFIAKQCLKLLPVKMRLTFRRYFEKGAGFLKKKKKLLITIRTTITRFLKR |
1LYP Chain:A ((8-20)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KFRNKIKEKLKKI---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LYP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 2546 for 42 contacts (60.6/contact) +
2D Compatibility (PS) -1459 + (NN) -1152 + (LL) 21996
1D Compatibility (HY) 0 + (ID) 250
Total energy: 21681.0 ( 516.21 by residue)
QMean score : 0.059
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