Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLVIDVGNTNTVLGVYHDGKLEYHWRIETSRHKTEDEFGMILRSLFDHSGLMFEQIDGIIISSVVPPIMFALERMCTKYFHIEPQIVGPGMKTGLNIKYD--NPKEVGADRIVNAVAAIHLYGNPLIVVDFGTATTYCYIDENKQYMGGAIAPGITISTEALYSRAAKLPRIEITRPDNIIGKNTVSAMQSGILFGYVGQVEGIVKRMKWQAKQEPKVIATGGLAPLIANESDCI--DIVDPFLTLKGLELIYERNRVGSV
2GTD Chain:A ((4-242))
MYLLVDVGNTHSVFSITEDGKTFRRWRLSTGVFQTEDELFSHLHPLL---GDAMREIKGIGVASVVPTQNTVIERFSQKYFHISPIWVKA--KNGC-VKWNVKNPSEVGADRVANVVAFVKEYGKNGIIIDMGTATTVDLV-VNGSYEGGAILPGFFMMVHSLFRGTAKLPLVEVKPADFVVGKDTEENIRLGVVNGSVYALEGIIGRIKEVYGDLP-VVLTGGQSKIV---KDMIKHEIFDEDLTIKGV------------
General information:
TITO was launched using:
RESULT:
Template:
2GTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -192235 for 1861 contacts (-103.3/contact) +
2D Compatibility (PS) -24915 + (NN) -8771 + (LL) 1036
1D Compatibility (HY) -20000 + (ID) 4950
Total energy: -249835.0 ( -134.25 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_2GTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GTD-query.scw
PDB file :
Tito_Scwrl_2GTD.pdb
: