Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYINKIQQGWFDFDVIVATPDMMGEVG-KIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGKVEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTMGPGVKVDSSTFNVK
3U4M Chain:A ((2-229))
-PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS----
General information:
TITO was launched using:
RESULT:
Template:
3U4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108299 for 1830 contacts (-59.2/contact) +
2D Compatibility (PS) -24994 + (NN) -16056 + (LL) 516
1D Compatibility (HY) -17600 + (ID) 6150
Total energy: -172583.0 ( -94.31 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_3U4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U4M-query.scw
PDB file :
Tito_Scwrl_3U4M.pdb
: