Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEHYYSEKPSVKSNKQTWSFRLRNKDFTFTSDSGVFSKKEVDFGSRLLIDSFEEPEVEGGILDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENAEQNGITNVKIYQSDLFSNVDSAQTFASILTNPPIRAGKKV----VHAIFEKSAEHLKASGELWIVIQKKQGAPSAIEKLEELFDEVSVVQKKKGYYIIKAKKV
2PJD Chain:A ((167-336))
---------------------------LTVKTLPGVFSRDGLDVGSQLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG-EVFASNVFSEVKG--RFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRAIM----
General information:
TITO was launched using:
RESULT:
Template:
2PJD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19796 for 1320 contacts (-15.0/contact) +
2D Compatibility (PS) -17028 + (NN) -2037 + (LL) 2448
1D Compatibility (HY) -5600 + (ID) 1950
Total energy: -43963.0 ( -33.31 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_2PJD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PJD-query.scw
PDB file :
Tito_Scwrl_2PJD.pdb
: