Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSERNQRKVYQGRVVSDKMDKTITVVVETYKKHTLYGKRVKYSKKFKAHDENNQAKIGDIVKIMETRPLSATKRFRLVEVVEEAVII
1RIP Chain:A ((5-84))
-----QRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMETRPLSATKRFRLVEIVEKAV--
General information:
TITO was launched using:
RESULT:
Template:
1RIP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8598 for 519 contacts (-16.6/contact) +
2D Compatibility (PS) -8211 + (NN) 1863 + (LL) 712
1D Compatibility (HY) -10800 + (ID) 3550
Total energy: -28584.0 ( -55.08 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_1RIP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RIP-query.scw
PDB file :
Tito_Scwrl_1RIP.pdb
: