Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTPFERLALYDINASIKEGSYVAVIGHTGSGKSTLLQHLNGLLKPTKGQISLGSTVIQAGKKNKDLKKLRKKVGIVFQFPEHQLFEETVLKDISFGPMNFGVKKEDAEQKAREMLQLVGLSEELLDRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPRGRKEIMDMFYELHQRGNLTTILVTHSMEDAAAYADEMIVMHKGTIQASGSPRDLFLKGEEMAGWGLDLPETIKFQRHLEAALGVRFNEPMLTIEDAAAEIRALFQGEKTL
4HZU Chain:B ((16-275))
--TPMAHTALTDVSLTVPDRGYLAIIGHTGSGKSTLIQQLNALLKPTSGTIKIDEFTITPETTNAALKPLRQHVGMVFQFPENQLFEETVRQDIAFGPKNFGMADADALALADEMLTTVGLDQSYAERSPFELSGGQMRRVAIAGVLAMQPKVLVLDEPTAGLDPQGRQEMMRLFARLHQEQGLTIVLVTHQMEDVAQYAEQVAVMHEGRLMKFGTPADVFSNREWLQDHQLDVPQAAQFARRLRDR-GLTFPKQPLTADQLA-------------
General information:
TITO was launched using:
RESULT:
Template:
4HZU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116663 for 2074 contacts (-56.3/contact) +
2D Compatibility (PS) -28769 + (NN) -15956 + (LL) 1796
1D Compatibility (HY) -23600 + (ID) 7100
Total energy: -190292.0 ( -91.75 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_4HZU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HZU-query.scw
PDB file :
Tito_Scwrl_4HZU.pdb
: