Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMASIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNSSKKPLFSVEERCELLREVTKDIPNITVETSQGLLIDYAKRKNAKAILRGLRAVSDFEYEMQGTSVNRVLDESIETFFMMTNNQYSFLSSSIVKEVARYNGSVSEFVPPEVELALQQKFRQG
4NAH Chain:A ((4-160))--TIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSKKEGTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK--


General information:
TITO was launched using:
RESULT:

Template: 4NAH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 713 -99299 -139.27 -632.48
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain A : 0.90

3D Compatibility (PKB) : -139.27
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.90
QMean score : 0.448

(partial model without unconserved sides chains):
PDB file : Tito_4NAH.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4NAH-query.scw
PDB file : Tito_Scwrl_4NAH.pdb: