Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAPHEDPEDHVAPAAQRVRAGTLLLANTDLLEPTFRRSVIYIVEHNDGGTLGVVLNRPSETAVYNVLPQWAKLAAKPKT--------MFIGGPVKRDAALCLAVLRVGADPEGVPGLRHVAGRLVMVD---LDADPEVLA-----AAVEGVRIYAGYSGWTIGQLEGEIERDDWIVLSALPSDVLVGPRADLWGQVLRRQPLPLSLLATHPIDLSRN
2HAF Chain:A ((22-187))
-----------------------FLVAMPSMKDPYFKRSVIYICEHNQDGAMGLMINAPIDITVGGMLKQVDIEPAYPQSHQENLKKPVFNGGPVSEDRGFILHRPR-----------DHYESSMKMTDDIAVTTSKDILTVLGTEAEPEGYIVALGYSGWSAGQLEVELTENSWLTIEADPELIFNTPVHEKWQKAIQK------------------
General information:
TITO was launched using:
RESULT:
Template:
2HAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106272 for 1075 contacts (-98.9/contact) +
2D Compatibility (PS) -15596 + (NN) -3864 + (LL) 2276
1D Compatibility (HY) -10800 + (ID) 2600
Total energy: -136856.0 ( -127.31 by residue)
QMean score : 0.326
(partial model without unconserved sides chains):
PDB file :
Tito_2HAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HAF-query.scw
PDB file :
Tito_Scwrl_2HAF.pdb
: