Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYTLRRRSLLAEVYSGRTGVSEVCDA--NPYLLRAAKFHGKPSRVICPICRKEQLTLVSWVFGEHLGAVSGSARTAEELILLATRFSEFAVHVVEVCRTCSWNHLVKSYVLGAARPARPPRGSGGTRTARNGARTASE
3AP1 Chain:A ((108-146))
---------------------DEVLDAAMQAFILEVIAKHGEPARV---LCNKDPFTLKSSVY----------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3AP1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1649 for 135 contacts (-12.2/contact) +
2D Compatibility (PS) -3936 + (NN) -683 + (LL) 6392
1D Compatibility (HY) -3600 + (ID) 800
Total energy: -4276.0 ( -31.67 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_3AP1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AP1-query.scw
PDB file :
Tito_Scwrl_3AP1.pdb
: