Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPFTSSVR
2YKR Chain:R ((20-70))
-----------------------------IDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYT----
General information:
TITO was launched using:
RESULT:
Template:
2YKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16511 for 340 contacts (-48.6/contact) +
2D Compatibility (PS) -5232 + (NN) 1121 + (LL) 2120
1D Compatibility (HY) -3600 + (ID) 1350
Total energy: -23452.0 ( -68.98 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_2YKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKR-query.scw
PDB file :
Tito_Scwrl_2YKR.pdb
: