Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRRTGQRWRGTLPGRRPWTRPAPATCRRHLAFVELRHYFARVMSSAIGSVARWIVPLLGVAAVASIGVIADPVRVVRAPALILVDAANPLAGKPFYVDP-ASAAMVAARNANPPNAELTS--VANTPQSYWLDQAFPPATVGGTVARYTGAAQAAGAMPVLTLYGIPHRDCGSYASGGFATGTDYRGWIDAVASGLGSSPATIIVEPDALAMADCLSPDQRQERFDLVRYAVDTLTRDPAAA-VYVDAGHSRWLSAEAMAARLNDVGVGR-ARGFSLNVSNFYTTDEEIGYGEAI-SGLTNGS-HYVIDTSRNGAGPAPDAPLNWCNPSGRALGAPPTTATAGAHADAYLWIKRPGESDGTCGRGEPQAGRFVSQYAIDLAHNAGQ |
| 2BOD Chain:X ((3-283)) | ---------------------------------------------------------------------------------------------SPFYVNPNMSSAEWVRNNPNDPRTPVIRDRIASVPQGTWFAH-HNPGQITGQVDALMSAAQAAGKIPILVVYNAPGRDCG------APSHSAYRSWIDEFAAGLKNRPAYIIVEPDLISLMSSCMQHVQQEVLETMAYAGKALKAGSSQARIYFDAGHSAWHSPAQMASWLQQADISNSAHGIATNTSNYRWTADEVAYAKAVLSAIGNPSLRAVIDTSRNGNGPAGN---EWCDPSGRAIGTPSTTNTGDPMIDAFLWIKLPGEADG-CIAG---AGQFVPQAAYEMA----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2BOD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -134501 for 2317 contacts (-58.0/contact) +
2D Compatibility (PS) -29051 + (NN) -15813 + (LL) 7652
1D Compatibility (HY) -17600 + (ID) 5950
Total energy: -195263.0 ( -84.27 by residue)
QMean score : 0.572
|
|
|