Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVTVGVICAIPQELAYLRGVLVDAKRQQVAQILFDSGQLDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIADRVVQHDFGLLTDERLRPYQPGHIPFIEPTERLGYPVDPAVIDRVKHRLDGFTLAPLSTAAGGGGRQPRIYYGTILTGDQYLH-CERTRNRLHHELGGMAVEMEGGAVAQICASFDIPWLVIRALSDLAGADSGVDFNRFVGEVAASSARVLLRLLPVLTAC
1ZOS Chain:A ((1-229))
--MKIGIIAAMPEELAYLVQHLDNTQEQVVLGNTYHTGTIASHEVVLVESGIGKVMSAMSVAILADHFQVDALINTGSAGAVAEGIAVGDVVIADKLAYHD----VDVTAFGYAYGQM----AQQPLYFESDKTFVAQIQESLSQL--------------DQNWHLGLIATGDSFVAGNDKIEAIKSHFPEVLAVEMEGAAIAQAAHTLNLPVLVIRAMSDNANHEANIFFDEFIIEAGRRSAQVLLAFLKAL---
General information:
TITO was launched using:
RESULT:
Template:
1ZOS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -194786 for 2050 contacts (-95.0/contact) +
2D Compatibility (PS) -24544 + (NN) -9489 + (LL) 1348
1D Compatibility (HY) -18000 + (ID) 3850
Total energy: -249321.0 ( -121.62 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_1ZOS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZOS-query.scw
PDB file :
Tito_Scwrl_1ZOS.pdb
: