Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVGPVGHQCAECVREGARAVRQPRTPFGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLAL-WP-PAVASGQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSA-LGGSVLVYLIAPLNTATAGASGAVFGLFGATFMVARR-----LHLDVRWVVALIVINLA--FTFLAPAISWQGHVGGLVTGALVAATYVYAPRERRNLIQATVTITVLVAFVVLIGWRTVDLLALFGGRLNLS
5F5K Chain:A ((93-272))
-----------------------------------AGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW---FGGLSGVVFALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDL--MSMANGAHIAGLAVGLAMAFVDSLNA-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
5F5K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141073 for 1342 contacts (-105.1/contact) +
2D Compatibility (PS) -16956 + (NN) -3647 + (LL) 6464
1D Compatibility (HY) -14400 + (ID) 2150
Total energy: -171762.0 ( -127.99 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_5F5K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5F5K-query.scw
PDB file :
Tito_Scwrl_5F5K.pdb
: