Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKPRNPADYVIGDDVEVSDVDLKQEEVY---VDGERL-----------TDERVEQMASESLRLAREREANLIPGGKSLSGGSAHSPAVQVVVSKATHAKLKELARSRKMSVSKLLRPVLDEFVQRETGRILPRR
4A2A Chain:A ((270-345))
----------------------DLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAK-IPGGVVLTGGGAKIPRIN---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4A2A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1701 for 193 contacts (8.8/contact) +
2D Compatibility (PS) -5924 + (NN) -3478 + (LL) 5256
1D Compatibility (HY) -3200 + (ID) 1150
Total energy: -6795.0 ( -35.21 by residue)
QMean score : 0.675
(partial model without unconserved sides chains):
PDB file :
Tito_4A2A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4A2A-query.scw
PDB file :
Tito_Scwrl_4A2A.pdb
: