Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEVVTAAPAPPVVRLPPAVRGPKLFQGLAFVVSRRRL--LGRFVRRYGKAFTANILMYGRVVVVADPQLARQVFTSSPEELG--NIQPNLSRMFGSGSVFALDGDDHRRRRRLLAPPFHGKSMKNYETIIEEETLR-ETANWPQGQA-FATLPSMMHITLNAILRAIFGAG----------GSELDELRRLIPPWVTLGSRLAALPKPKRDYGRLSPWGRLAEWRRQYDTVIDKLI---EAERADPNFADRTDVLALMLRSTYDDGSIMSRKDIGDELLTLLAAGHETTAATLGWAFERLS--RHPDVLAALVEEVDNGGHELRQAAILEV-----QRARTVID------FAARRVNPPVYQLGEWVIPRGYSIIINIAQIHGDPDVFPQPDRFDPQRYIGSKPSPFAWIPFGGGTRRCVGAAFANMEMDVVLRTVLRHFTLETTTAAGERSHGRGVAFTPKDGGRVVMRRR |
| 3L4D Chain:A ((3-419)) | --------------KLPPVVHGTTPFVGHIIQFGKDPLGFMLKAKKKYGGIFTMNICG-NRITVVGDVHQHSKFFTPRNEILSPREVYSFMVPVFGEGVAYAAPYPRMREQLNFLAEELTVAKFQNFAPSIQHEVRKFMKANWNKDEGEINILDDCSAMIINTACQCLFGEDLRKRLDARQFAQLLAKMESCLIPAAVFLPWILKLPLPQS--------YRCRDARAELQDILSEIIIAREKEEAQKD-TNTSDLLAGLLGAVYRDGTRMSQHEVCGMIVAAMFAGQHTSTITTTWSLLHLMDPRNKRHLAKLHQEIDEFPAQLNYDNVMEEMPFAEQCARESIRRDPPLVMLMRKVLKPV-QVGKYVVPEGDIIACSPLLSHQDEEAFPNPREWNPERNM--KLVDGAFCGFGAGVHKCIGEKFGLLQVKTVLATVLRDYDFE----------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3L4D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199716 for 2984 contacts (-66.9/contact) +
2D Compatibility (PS) -41926 + (NN) -28236 + (LL) 2604
1D Compatibility (HY) -25200 + (ID) 5450
Total energy: -297924.0 ( -99.84 by residue)
QMean score : 0.471
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