Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPGVQDRVIVVTGAGGGLGREYALTLAGEGASVVVNDLGGARDGTGAGSAMADEVVAEIRDKGGRAVANYDSVATEDGAANIIKTALDEFGAVHGVVSNAGILRDGTFHKMSFENWDAVLKVHLYGGYHVLRAAWPHFREQSYGRVVVATSTSGLFGNFGQTNYGAAKLGLVGLINTLALEGAKYNIHANALAPIAATRMTQDILPPEVLEKLTPEFVAPVVAYLCTEECADNASVYVVGGGKVQRVALFGNDGA----NFDKPPSVQDVAARWAEITDLSGAKIAGFKL
3OML Chain:A ((13-313))
------RVAVVTGAGAGLGREYALLFAERGAKVVVN--------------AADIVVDEIRKAGGEAVADYNSVI--DGA-KVIE----------ILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVP------TEGILPDILFNELKPKLIAPVVAYLCHESCEDNGSYIESAAGWATKLHMVRGKGAVLRPSLDDPVTIEYVKDVWSNVTDMSKAKHLG---
General information:
TITO was launched using:
RESULT:
Template:
3OML.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133916 for 1869 contacts (-71.7/contact) +
2D Compatibility (PS) -26712 + (NN) -14349 + (LL) 2116
1D Compatibility (HY) -23200 + (ID) 6150
Total energy: -202211.0 ( -108.19 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_3OML.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OML-query.scw
PDB file :
Tito_Scwrl_3OML.pdb
: