Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLNDIQVWTTACAYDHLIPGRGVGVLLDDGSQVALFR-LDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRVSVPVYPARVTPEGRIQVARVAV
2JO6 Chain:A ((4-100))
---------WKDICKIDDILPETGVCALLGD-EQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVK------------
General information:
TITO was launched using:
RESULT:
Template:
2JO6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50588 for 679 contacts (-74.5/contact) +
2D Compatibility (PS) -10499 + (NN) -6384 + (LL) 1980
1D Compatibility (HY) -11200 + (ID) 2100
Total energy: -78791.0 ( -116.04 by residue)
QMean score : 0.260
(partial model without unconserved sides chains):
PDB file :
Tito_2JO6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JO6-query.scw
PDB file :
Tito_Scwrl_2JO6.pdb
: