Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIG-RYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
1N5N Chain:A ((13-176))
MAILNILEFPDPRLRTIAKPVEVVDDA-----VRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR----VFINPEFEP--LTEEM---DQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQH--------------------
General information:
TITO was launched using:
RESULT:
Template:
1N5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90571 for 1294 contacts (-70.0/contact) +
2D Compatibility (PS) -17462 + (NN) -3152 + (LL) -540
1D Compatibility (HY) -12800 + (ID) 3350
Total energy: -127875.0 ( -98.82 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_1N5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N5N-query.scw
PDB file :
Tito_Scwrl_1N5N.pdb
: