Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPR--YADIGGGPLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPLVRGGTYLDPEAAAAGAAAVAGQGRG
4PGM Chain:A ((2-235))
-----KLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDENLKP-SKPSYYLDPEAAAA-----------
General information:
TITO was launched using:
RESULT:
Template:
4PGM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106385 for 1951 contacts (-54.5/contact) +
2D Compatibility (PS) -25248 + (NN) -18105 + (LL) 628
1D Compatibility (HY) -20800 + (ID) 7400
Total energy: -177310.0 ( -90.88 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_4PGM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PGM-query.scw
PDB file :
Tito_Scwrl_4PGM.pdb
: