Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIRIGTRGSLLATTQAATVRDALIAG--GHSAELVTISTEGDRSMAPIASLG-VGVFTTALREAMEAGLVDAAVHSYKDLPTAADPRFTVAAIPPRNDPRDAVVARDGLTLGELPVGSLVGTSSPRRAAQLRALGLGLEIRPLRGNLDTRLNKVSSGDLDAIVVARAGLARLGRLDDVTETLEPVQMLPAPAQGALAVECRAGDSRLVAVLAELDDADTRAAVTAERALLADLEAGCSAPVGAIAEVVESIDEDGRVFEELSLRGCVAALDGSDVIRASGIGSCGRARELGLSVAAELFELGARELMWGVRH |
1PDA Chain:A ((5-303)) | VLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVI--------GKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGACQVPIGSYAELI-----DGEIW----LRGLVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREIL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PDA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -122850 for 2457 contacts (-50.0/contact) +
2D Compatibility (PS) -31996 + (NN) -23027 + (LL) 1520
1D Compatibility (HY) -20800 + (ID) 6550
Total energy: -203703.0 ( -82.91 by residue)
QMean score : 0.455
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