Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPVSYTRKDSIAVISMDDGKVNALGPAMQQALNAAIDNADRDDVGALVITGNGRVFSGGFDLKILTSGEVQPAIDMLRGGFELAYRLLSYPKPVVMACTGHAIAMGAFLLSCGDHRVAAHAYNIQANEVAIGMTIPYAALEIMKLRLTRSAYQQATGLAKTFFGETALAAGFIDEIALPEVVVSRAEEAAREFAGLNQHAHAATKLRSRADALTAIRAGIDGIAAEFGL
4FND Chain:A ((2-232))
MSDPVSYTRKDSIAVISMDDGKVNALGPAMQQALNAAIDNADRDDVGALVITGNGRVFSGGFDLKILTSGEVQPAIDMLRGGFELAYRLLSYPKPVVMACTGHAIAMGAFLLSCGDHRVAAHAYNIQANEVAIGMTIPYAALEIMKLRLTRSAYQQATGLAKTFFGETALAAGFIDEIALPEVVVSRAEEAAREFAGLNQHAHAATKLRSRADALTAIRAGIDGIAAEFGL
General information:
TITO was launched using:
RESULT:
Template:
4FND.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173814 for 2010 contacts (-86.5/contact) +
2D Compatibility (PS) -25696 + (NN) -12220 + (LL) 0
1D Compatibility (HY) -30400 + (ID) 11550
Total energy: -253680.0 ( -126.21 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_4FND.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FND-query.scw
PDB file :
Tito_Scwrl_4FND.pdb
: