Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARASGASDYRSGELSHQDERGAAHMVDITEKATTKRTAVAAGILRTSAQVVALISTGGLPKGDALATARVAGIMAAKRTSDLIPLCHQLALTGVD--VDFTVGQLDIEITATVRSTDRTGVEMEALTAVSVAALTLYDMIKAVDPGALIDDIRVLHKEGGRRGTWTRR
2IIH Chain:A ((10-155))
----------------------RPRMVDVTEKPETFRTATAEAFVELTEEALSALEKGGVGKGDPLVVAQLAGILAAKKTADLIPLCHPLPLTGVEVRVELLKAEKRVRIEATVKTKAETGVEMEAMTACAVAALTVYDMLKAASKGLVISQVRLLHKAGGKSGEWRR-
General information:
TITO was launched using:
RESULT:
Template:
2IIH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71349 for 1122 contacts (-63.6/contact) +
2D Compatibility (PS) -15479 + (NN) -7663 + (LL) 900
1D Compatibility (HY) -13600 + (ID) 3600
Total energy: -110791.0 ( -98.74 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_2IIH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IIH-query.scw
PDB file :
Tito_Scwrl_2IIH.pdb
: