Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADQLTPHLEIPTAIKPRDGRFGSGPSKVRLEQLQTLTTTAAALFGT-SHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKRSLHLTYGEFSAKF---ASAVSKNPFVGEPIIITSDPGSAPEPQTDPS-VDVIAWAHNETSTGVAVAVRR----PEGSDDALVVIDATSGAGGLPVDIAETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNG---GLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVERL |
| 3FFR Chain:A ((8-357)) | ---------------------FTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFL-ASATEIWERIIQNCVEKKSFHCVNGSFSKRFYEFAGELGREAYKEEAAF---GKGFYPADITVPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWTKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGK----VTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMT--TIVANTTMLPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTL------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3FFR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -168406 for 2895 contacts (-58.2/contact) +
2D Compatibility (PS) -37145 + (NN) -24179 + (LL) 2564
1D Compatibility (HY) -16800 + (ID) 4600
Total energy: -248566.0 ( -85.86 by residue)
QMean score : 0.461
|
|
|