Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFTHR
3PZK Chain:A ((2-255))
-TYETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIK----------FTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFT--
General information:
TITO was launched using:
RESULT:
Template:
3PZK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119442 for 1978 contacts (-60.4/contact) +
2D Compatibility (PS) -26478 + (NN) -9732 + (LL) 1304
1D Compatibility (HY) -29200 + (ID) 12200
Total energy: -195748.0 ( -98.96 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_3PZK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PZK-query.scw
PDB file :
Tito_Scwrl_3PZK.pdb
: