Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGAAPTNGAPLSYPSICEGVHWGHLVGGHQPAY
1NLR Chain:A ((45-67))
-DGSAPTNGAPKSYPSVFNGCHY-----------
General information:
TITO was launched using:
RESULT:
Template:
1NLR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1682 for 61 contacts (-27.6/contact) +
2D Compatibility (PS) -2441 + (NN) -3207 + (LL) 364
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -9266.0 ( -151.90 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_1NLR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NLR-query.scw
PDB file :
Tito_Scwrl_1NLR.pdb
: