Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDHAEVS-VITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGVPY-TDALPEMPEPAIEVEPPVCD-CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
4TWI Chain:A ((15-244))
--LVALTGAGVSAESGIPTFRG-KDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPL------PKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRKAL-
General information:
TITO was launched using:
RESULT:
Template:
4TWI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106887 for 1881 contacts (-56.8/contact) +
2D Compatibility (PS) -24857 + (NN) -14821 + (LL) 904
1D Compatibility (HY) -18400 + (ID) 5450
Total energy: -169511.0 ( -90.12 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_4TWI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TWI-query.scw
PDB file :
Tito_Scwrl_4TWI.pdb
: