Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRHTRFHPIKLAWITAVVAGLMVGVATPADAEPGQWDPTLPALVSAGAPGDPLAVANASLQATAQATQTTLDLGRQFLGGLGINLGGPAASAPSAATTGASRIPRANARQAVEYVIRRAGSQMGVPYSWGGGSLQGPSKGVDSGANTVGFDCSGLVRYAFAGVGVLIPRFSGDQYNAGRHVPPAEAKRGDLIFYGPGGGQHVTLYLGNGQMLEASGSAGKVTVSPVRKAGMTPFVTRIIEY
3NE0 Chain:A ((1003-1210))
---------------------------------GLWDPTLPMIPSANIPGDPIAVVNQVLGISATSAQVTANMGRKFLEQLGILQPTDTGITNAPAGSAQGRIPRVYGRQASEYVIRRGMSQIGVPYSWGGGNAAGPSKGIDSGAGTVGFDCSGLVLYSFAGVGIKLPHYSGSQYNLGRKIPSSQMRRGDVIFYGPNGSQHVTIYLGNGQMLEAPDVGLKVRVAPVRTAGMTPYVVRYIEY
General information:
TITO was launched using:
RESULT:
Template:
3NE0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81273 for 1784 contacts (-45.6/contact) +
2D Compatibility (PS) -22032 + (NN) -12905 + (LL) 2868
1D Compatibility (HY) -18400 + (ID) 6250
Total energy: -137992.0 ( -77.35 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_3NE0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NE0-query.scw
PDB file :
Tito_Scwrl_3NE0.pdb
: