Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDRIVMEVSRYRPEIESAPTFQAYEVPLTREWAVLDGLTYIKDHLDGTLSFRWSCRMGICGSSGMTINGDPKLACATFLADYLPGPVRVEPMRNFPVIRDLVVDISDFMAKLPSVKPWLVRHDEPPVEDGEYRQTPAELDAFKQFSMCINCMLCYSACPVYALDPDFLGPAAIALGQRYNLDSRDQGAADRRDVLAAADGAWACTLVGECSTACPKGVDPAGAIQRYKLTAATHALKKLLFPWGGG
1L0V Chain:B ((3-242))
-MKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDG-MKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRT-ADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFLIATLKP----
General information:
TITO was launched using:
RESULT:
Template:
1L0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134139 for 1911 contacts (-70.2/contact) +
2D Compatibility (PS) -24648 + (NN) -7471 + (LL) -432
1D Compatibility (HY) -23600 + (ID) 6050
Total energy: -196340.0 ( -102.74 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_1L0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L0V-query.scw
PDB file :
Tito_Scwrl_1L0V.pdb
: