Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLSGEYAPSPLDWSREQADTYMKSGGTEGTQLQGKPVILLTTVGAKTGKLRKTPLMRVEHDGQYAIVASLGGAPKNPVWYHNVVKNPRVELQDG-TVTGDYDAREVFGDEKAIWWQRAVAVWPDYASYQTKTDRQIPVFVLTPVRAGG
4Y9I Chain:A ((1-113))
-----------------------------GVHVLDRPIVLFTTTGAKSGKKRYVPLMRVEENGKYAMVASKGGDPKHPSWYFNVKANPTVSVQDGDKVLPDRTARELEGEER-HWWKLAVEAYPPYAEYQTKTDRLIPVFIV-------
General information:
TITO was launched using:
RESULT:
Template:
4Y9I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51495 for 774 contacts (-66.5/contact) +
2D Compatibility (PS) -12071 + (NN) -5935 + (LL) 1044
1D Compatibility (HY) -8000 + (ID) 3150
Total energy: -79607.0 ( -102.85 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_4Y9I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y9I-query.scw
PDB file :
Tito_Scwrl_4Y9I.pdb
: