Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMPLILLPAVDVVEGRAVRLVQGKAGSQTEYGSAVDAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAVRD
2Y88 Chain:A ((1-244))
-MPLILLPAVNVVEGRAVRLVQGKAGSQTEYGSAVDAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAVRD
General information:
TITO was launched using:
RESULT:
Template:
2Y88.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159577 for 2221 contacts (-71.8/contact) +
2D Compatibility (PS) -26953 + (NN) -12155 + (LL) 208
1D Compatibility (HY) -31600 + (ID) 12150
Total energy: -242227.0 ( -109.06 by residue)
QMean score : 0.747
(partial model without unconserved sides chains):
PDB file :
Tito_2Y88.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y88-query.scw
PDB file :
Tito_Scwrl_2Y88.pdb
: