Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAYKTVVVGTDGSDSSMRAVDRAAQIAGAD-AKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHN--------AGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTT
1WJG Chain:A ((2-136))
---FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEP------VPDYLGEPFFE--------EALRRRLERAEGVLEEARALTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLV---
General information:
TITO was launched using:
RESULT:
Template:
1WJG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67672 for 964 contacts (-70.2/contact) +
2D Compatibility (PS) -13532 + (NN) -267 + (LL) 1332
1D Compatibility (HY) -7200 + (ID) 2250
Total energy: -89589.0 ( -92.93 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_1WJG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WJG-query.scw
PDB file :
Tito_Scwrl_1WJG.pdb
: