Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVRLDPSRCVGHAQCYAVDPDLFPIDDSGNSILAEHEVRPEDMQLTRDGVAACPEMALILEEDDAD
1ROF Chain:A ((1-60))
MKVRVDADACIGCGVCENLCPDVFQLGDDGKAKVLQPET---DLPCAKDAADSCPTGAISVEE----
General information:
TITO was launched using:
RESULT:
Template:
1ROF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24972 for 444 contacts (-56.2/contact) +
2D Compatibility (PS) -5897 + (NN) -752 + (LL) -20
1D Compatibility (HY) -4000 + (ID) 1050
Total energy: -36691.0 ( -82.64 by residue)
QMean score : 0.209
(partial model without unconserved sides chains):
PDB file :
Tito_1ROF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ROF-query.scw
PDB file :
Tito_Scwrl_1ROF.pdb
: