Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQPSPDSPAPLNVTVPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAWLNSHGEGGSVVGVNNNTDFV--RSISSGMVYGTAEPLHRGRRQQLWLVTITDDTDRVVARGQVRLQNLEARP
5HMC Chain:A ((13-133))
---------------PYVEHLGLQFERIDPDRAVAYWSVRADLLQPHGILHGGVHCAVVESVASAAADRWL---GDRGTVVGVSNSTDFFAPATVADGRLTSTALPVHRGATQQVWSVETVDAAGRLVARGQVRLHNLR---
General information:
TITO was launched using:
RESULT:
Template:
5HMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61090 for 889 contacts (-68.7/contact) +
2D Compatibility (PS) -12102 + (NN) -1294 + (LL) 352
1D Compatibility (HY) -10400 + (ID) 3150
Total energy: -87684.0 ( -98.63 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_5HMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5HMC-query.scw
PDB file :
Tito_Scwrl_5HMC.pdb
: