Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLTTMIKTAVAVVAMAAIATFAAPVALAAYPITGKLGSELTMTDTV--GQVVLGWKVSDLKSSTAVIPGYPVAG-------QVWEATATVNAIRGSVTPAVSQFNARTADGIN----YRVLWQAAGPDTI-SGATIPQGEQSTGKIYFDVTGPS--PTIVAMNNGMEDLLIWEP
5FNO Chain:A ((38-182))
----------------------------VVYTLPCEDGNSTARTAEIRLKQATLLYGPS-LLGNASYFPGGPLGDAISLRDQTVWEGAAVVQSLRAFTDAAKVAANIKQNGGLNSLDDFKVLYQDGWKGSVPQGIARGQSENYTSDLLFSMERLSVNPYILKRLHPTEDALPFQ-
General information:
TITO was launched using:
RESULT:
Template:
5FNO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3445 for 569 contacts (-6.1/contact) +
2D Compatibility (PS) -13016 + (NN) 377 + (LL) 3560
1D Compatibility (HY) -4800 + (ID) 1700
Total energy: -19024.0 ( -33.43 by residue)
QMean score : -0.100
(partial model without unconserved sides chains):
PDB file :
Tito_5FNO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5FNO-query.scw
PDB file :
Tito_Scwrl_5FNO.pdb
: