Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDG---DAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAM-AMFDGALGAGGARSMIARLQGRMAAPEEMAGIVVFLLSDDASMITGTTQIADGGTIAALW
4NBV Chain:A ((3-243))
-----LQGRVAIITGAAAGIGFATAQRFAEDGAIVVLCDVQEARVREAAARLAATGATVSAYRVDVTRRDEVDAMVAAVLAAHQRVDILVNNAGITKDARLAKMTEAQFDAVIDVNLKGVFNCAQAVAGLMTEQGKGVILNASSVVGLYGNFGQTNYAASKFGVIGFTKTWARELGPKGVRVNAVCPGFVNTEILQTVPDKVLDGMTSSCWLR--------RLAEPAEIASIYAFLASDDASYVNGVAIEASGG------
General information:
TITO was launched using:
RESULT:
Template:
4NBV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152437 for 2042 contacts (-74.7/contact) +
2D Compatibility (PS) -25677 + (NN) -6893 + (LL) 1584
1D Compatibility (HY) -14400 + (ID) 4950
Total energy: -202773.0 ( -99.30 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_4NBV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NBV-query.scw
PDB file :
Tito_Scwrl_4NBV.pdb
: