Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGRLIGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAVAAELADAARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHNDFGAVEVSSQPEWVT
1NFR Chain:A ((2-245))
-SGRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVAGLAHN---------------
General information:
TITO was launched using:
RESULT:
Template:
1NFR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143425 for 2152 contacts (-66.6/contact) +
2D Compatibility (PS) -25717 + (NN) -5023 + (LL) 1152
1D Compatibility (HY) -32400 + (ID) 12050
Total energy: -217463.0 ( -101.05 by residue)
QMean score : 0.664
(partial model without unconserved sides chains):
PDB file :
Tito_1NFR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NFR-query.scw
PDB file :
Tito_Scwrl_1NFR.pdb
: