Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQSLAVKTFEDLFAELGDRARTRPADSTTVAALDGGVHALGKKLLEEAGEVWLAAEHESNDALAEEISQLLYWTQVLMISRGLSLDDVYRKL
1YXB Chain:A ((4-87))
-------KTFEELFTELQHKAAN---TSRTAELVDKGVHAIGKKVVEEAAEVWMAAEYEGKDAAAEEISQLLYHVQVMMVARGISLDDVY---
General information:
TITO was launched using:
RESULT:
Template:
1YXB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5157 for 441 contacts (-11.7/contact) +
2D Compatibility (PS) -8139 + (NN) -2340 + (LL) 1244
1D Compatibility (HY) -2800 + (ID) 1500
Total energy: -18692.0 ( -42.39 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_1YXB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YXB-query.scw
PDB file :
Tito_Scwrl_1YXB.pdb
: