Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSPDPYAALPKLPSFSLTSTSITDGQPLATPQVSGIMGAGGADASPQLRWSGFPSETRSFAVTVYDPDAPTLSGFWHWAVANLPANVTELPEGVGDGR-ELPGGALTLVNDAGMRRYVGAAPPPGHGVHRYYVAVHAVKVEKLDLPEDASPAYLGFNLFQHAIARAVIFGTYEQR
1VI3 Chain:A ((2-161))
---------------SLKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGE-THRYIFTVHALDIERIDVDEGASGAMVGFNVHFHSLASASITAMFSE-
General information:
TITO was launched using:
RESULT:
Template:
1VI3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74262 for 1273 contacts (-58.3/contact) +
2D Compatibility (PS) -17558 + (NN) -14827 + (LL) 372
1D Compatibility (HY) -10800 + (ID) 3650
Total energy: -120725.0 ( -94.84 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_1VI3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VI3-query.scw
PDB file :
Tito_Scwrl_1VI3.pdb
: