Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKSFYDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLVNSPF
2BMM Chain:A ((2-122))
---TFYEAVGGEETFTRLARRFYEGVAADPVLRPMYPEEDLGPAEERLRLFLMQYWGGPRTYSERRGHPRLRMRHFPYRIGAEERDRWLTHMR---AAVDDLALPAHLEQQLWEYLVYAAYAMVNVP-
General information:
TITO was launched using:
RESULT:
Template:
2BMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57433 for 835 contacts (-68.8/contact) +
2D Compatibility (PS) -13550 + (NN) -12323 + (LL) 652
1D Compatibility (HY) -12800 + (ID) 3550
Total energy: -99004.0 ( -118.57 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_2BMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BMM-query.scw
PDB file :
Tito_Scwrl_2BMM.pdb
: