Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALRRRHEPDGWPFSQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTR-AMGVHRQTRGGVASVHADSLRGAVLVHGQLRNSIPISANVPASGANTKSSIAH
5HMC Chain:A ((71-128))
----------------------------RGTVVGVSNSTDFFAPATVADGRLTSTALPVHRGATQQVWSVETVDAAGRLVARGQVR----------------------
General information:
TITO was launched using:
RESULT:
Template:
5HMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4999 for 287 contacts (-17.4/contact) +
2D Compatibility (PS) -5564 + (NN) 1314 + (LL) 2372
1D Compatibility (HY) -2000 + (ID) 950
Total energy: -9827.0 ( -34.24 by residue)
QMean score : 0.093
(partial model without unconserved sides chains):
PDB file :
Tito_5HMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5HMC-query.scw
PDB file :
Tito_Scwrl_5HMC.pdb
: