Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVSRRDVLKFAAATPGVLGLGVVASSLRAAPASAGSLGTLLDYAAGVIPASQIRAAGAVGAIRYVSDRRPGGAWMLGKPIQLSEARDLSGNGLKIVSCYQYGKGSTADWLGGASAGVQHARRGSELHAAAGGPTSAPIYASIDDNPSYEQYKNQIVPYLRSWESVIGHQRTGVYANSKTIDWAVNDGLGSYFWQHNWGSPKGYTHPAAHLHQVEIDKRKVGGVGVDVNQILKPQFGQWA
4PMR Chain:A ((3-206))
------------------------------------SLGTLLDYAAGVIPASQIRAAGAVGAIRYVSDRRPGGAWMLGKPIQLSEARDLSGNGLKIVSCYQYGKGSTADWLGGASAGVQHARRGSELHAAAGGPTSAPIYASIDDNPSYEQYKNQIVPYLRSWESVIGHQRTGVYANSKTIDWAVNDGLGSYFWQHNWGSPKGYTHPAAHLHQVE--KRKVGGVGVDVNQILKPQFGQWA
General information:
TITO was launched using:
RESULT:
Template:
4PMR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82858 for 1754 contacts (-47.2/contact) +
2D Compatibility (PS) -22109 + (NN) -13344 + (LL) 2516
1D Compatibility (HY) -24000 + (ID) 10100
Total energy: -149895.0 ( -85.46 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_4PMR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PMR-query.scw
PDB file :
Tito_Scwrl_4PMR.pdb
: