Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQVPSPSEAAT
1U8A Chain:A ((2-166))
-APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGG--VRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRL----------
General information:
TITO was launched using:
RESULT:
Template:
1U8A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99567 for 1342 contacts (-74.2/contact) +
2D Compatibility (PS) -18608 + (NN) -11278 + (LL) 600
1D Compatibility (HY) -19200 + (ID) 8150
Total energy: -156203.0 ( -116.40 by residue)
QMean score : 0.945
(partial model without unconserved sides chains):
PDB file :
Tito_1U8A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U8A-query.scw
PDB file :
Tito_Scwrl_1U8A.pdb
: