Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTALNRAVASARVGTEVIRVRGLTFRYPKAAEPAVRGMEFTVGRGEIFGLLGPSGAGKSTTQKLLIGLLRDHGGQATVWDKEPAEWGP----DYYERIGVSFELPNHYQKLTGYENLRFFASLYAGATADPMQ-----LLAAVGLADDAHTLVGKYSKGMQMRLPFARSLINDPELLFLDEPTSGLDPVNARKIKDIIVDLKARGRTIFLTTHDMATADELCDRVAFVVDGRIVALDSPTELKIARSRRRVRVEYRGDGGGLETAEFGMDGLADDPAFHSVLRNHHVETIHSREASLDDVFVEVTGRQLT |
| 4YMS Chain:J ((16-233)) | ---------------------------------VLKGVTLKVNKGEVVVIIGPSGSGKSTLLRC-INLLEEPTKGEVFIDGVKINNGKVNINKVRQKVGMVFQHFNLFPHLTAIENITLAPVKVKKMNKKEAEELAVDLLAKVGLLDKKDQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANEGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAKNERTR---------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YMS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -104406 for 1633 contacts (-63.9/contact) +
2D Compatibility (PS) -22805 + (NN) -9520 + (LL) 6064
1D Compatibility (HY) -15200 + (ID) 3450
Total energy: -149317.0 ( -91.44 by residue)
QMean score : 0.487
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