Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRDLAPALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVGKPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSYSLQMRAVGQPLQDHLAAVLHRQR
2A13 Chain:A ((18-165))
------PFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSGKPVIAYTQKTWKLESGAPMHAESGYFRPRPDGSIEVVIAQSTGLVEVQKGTYNVDEQSIKL----KSD----LVGNASKVKEISREFELVDGKLSYVVRMSTTTNPLQPHLKAILDK--
General information:
TITO was launched using:
RESULT:
Template:
2A13.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95727 for 1304 contacts (-73.4/contact) +
2D Compatibility (PS) -15747 + (NN) -8266 + (LL) 960
1D Compatibility (HY) -11200 + (ID) 3050
Total energy: -133030.0 ( -102.02 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_2A13.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A13-query.scw
PDB file :
Tito_Scwrl_2A13.pdb
: