Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MHCPFCRHPDSRVIDSRETDEGQAIRRRRSCPECGRRFTTVETAVLAVVKRSGVTEPFSREKVISGVRRACQGRQVDDDALNLLAQQVEDSVRAAGSPEIPSHDVGLAILGPLRELDEVAYLRFASVYRSFSSADDFAREIEALRAHRNLSAHS |
2FNA Chain:A ((194-228)) | ------------------------------SPLFGRAFSTVEL------------KPFSREEAIEFLRRGFQEADID----------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2FNA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1097 for 115 contacts (-9.5/contact) +
2D Compatibility (PS) -3696 + (NN) -2085 + (LL) 8304
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -1824.0 ( -15.86 by residue)
QMean score : 0.512
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