Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAETAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGMEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSPLATEA
2AF6 Chain:A ((3-247))
--ETAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIMDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGMEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVMPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSPLA---
General information:
TITO was launched using:
RESULT:
Template:
2AF6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114439 for 1862 contacts (-61.5/contact) +
2D Compatibility (PS) -27213 + (NN) -18706 + (LL) 652
1D Compatibility (HY) -29600 + (ID) 12150
Total energy: -201456.0 ( -108.19 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_2AF6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AF6-query.scw
PDB file :
Tito_Scwrl_2AF6.pdb
: