Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGLEPLLDLH
1YL5 Chain:A ((4-247))
-RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGLEPLLDLH
General information:
TITO was launched using:
RESULT:
Template:
1YL5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162153 for 1957 contacts (-82.9/contact) +
2D Compatibility (PS) -26923 + (NN) -18441 + (LL) 208
1D Compatibility (HY) -30800 + (ID) 12200
Total energy: -250309.0 ( -127.90 by residue)
QMean score : 0.795
(partial model without unconserved sides chains):
PDB file :
Tito_1YL5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YL5-query.scw
PDB file :
Tito_Scwrl_1YL5.pdb
: