Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLRLVSPIKAFADGIVAVAIAVVLMFGLANTPRAVAADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLN-FTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAALTS
1ZZO Chain:A ((49-178))
----------------------------------------QLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVR---GRMSQDELTRRVTALT-
General information:
TITO was launched using:
RESULT:
Template:
1ZZO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98841 for 1019 contacts (-97.0/contact) +
2D Compatibility (PS) -14110 + (NN) -5990 + (LL) 3756
1D Compatibility (HY) -14400 + (ID) 3600
Total energy: -133185.0 ( -130.70 by residue)
QMean score : 0.649
(partial model without unconserved sides chains):
PDB file :
Tito_1ZZO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZZO-query.scw
PDB file :
Tito_Scwrl_1ZZO.pdb
: