Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADKSKRPPRFDLKSADGSFGRLVQIGGTTIVVVFAVVLVFYIVTSRDDKKDGVAGPGDAVRVTSSKLVTQPGTSNPKAVVSFYEDFLCPACGIFERGFGPTVSKLVDIGAVAADYTMVAILDSASNQHYSSRAAAAAYCVADESIEAFRRFHAALFSKDIQPAELGKDFPDNARLIELAREAGVVGKVPDCINSGKYIEKVDGLAAAVNVHATPTVRVNGTEYEWSTPAALVAKIKEIVGDVPGIDSAAATATS
4JR4 Chain:A ((28-224))
----------------------------------------------------------DAVRVTSSKLVTQPGTSNPKAVVSFYEDFLCPACGIFERGFGPTVSKLVDIGAVAADYTMVAILDSASNQHYSSRAAAAAYCVADESIEAFRRFHAALFSKDIQPAELGKDFPDNARLIELAREAGVVGKVPDCINSGKYIEKVDGLAAAVNVHATPTVRVNGTEYEWSTPAALVAKIKEIVGDVPGIDSAAATATS
General information:
TITO was launched using:
RESULT:
Template:
4JR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137940 for 1642 contacts (-84.0/contact) +
2D Compatibility (PS) -21167 + (NN) -5246 + (LL) 3076
1D Compatibility (HY) -24800 + (ID) 9850
Total energy: -195927.0 ( -119.32 by residue)
QMean score : 0.643
(partial model without unconserved sides chains):
PDB file :
Tito_4JR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JR4-query.scw
PDB file :
Tito_Scwrl_4JR4.pdb
: